Arctic Microbial Permafrost Degradation Project – a blog by Margaret Cramm

12th April 2021

Although the NERC Arctic Station has not yet opened for the season, it was fantastic to be able to support a science team in Ny-Alesund earlier this year. Margaret Cramm, a PhD student at Queen Mary University of London, was part of the AMP’d Project who visited in March 2021. She explains what their research is all about and how they travelled and worked in unusual times for Arctic scientists.

6 April 2021

Blog by Margaret Cramm, Queen Mary University of London

View of the mountains looking east from Ny-â„«lesund
View of the mountains looking east from Ny-â„«lesund.

The Arctic is warming faster than other areas of Earth. For scientists studying climate change in the Arctic, fieldwork is important for observing and studying how Arctic warming is affecting environmental systems. This past month, I participated in an expedition to Svalbard supported by the US Department of Energy, British Antarctic Survey and Norwegian Polar Institute.

The project, led by Dr. Karen Lloyd and Dr. Tatiana Vishnivetskaya of the University of Tennessee, is called Arctic Microbial Permafrost Degradation (or AMP’d, for short). Our goal is to identify the activity of microbes in permafrost as it thaws due to climate warming. Permafrost contains large amounts of trapped organic matter. When it thaws this organic matter gets decomposed by microbes and fuels the microbial production of greenhouse gases like carbon dioxide and methane. Understanding the microbial contribution to greenhouse gas emissions from thawing permafrost can help climate modellers better predict future climate warming. At present, microbial activity in Svalbard permafrost is not well understood. With this project we aim to understand how microbial communities in Svalbard will respond to permafrost thaw and climate warming.

Photo of the AMP'd team
Photo 2: The Amp’d team was ready to travel after quarantine in Oslo. Back row from left to right: Donato Giovannelli (taking the selfie), Karen Lloyd, Brianna Green, Andrey Abramov, James Bradley. Front row from left to right: Margaret Cramm, Matteo Selci, Tatiana Vishnivetskaya, Katie Sipes, Sayali Mulay. Photo credit: Brianna Green.

Doing fieldwork in Svalbard during the Coronavirus pandemic comes with some challenges. Each member of the team had to do at least four Covid-19 tests and a 10-day hotel quarantine in Oslo before we could travel to Svalbard. After all the tests and the quarantine, we were confident that we were healthy and ready for fieldwork in Svalbard.

View from the MS Farm of Prins Karls Forland and sea ice on the sound of Forlandsundet.
Photo 3: View from the MS Farm of Prins Karls Forland and sea ice on the sound of Forlandsundet.

Our first stop in Svalbard was in Longyearbyen, the population centre of Svalbard. From there we took the MS Farm, a small charter boat, on a 14-hour journey to Ny-â„«lesund, the small research town that served as our fieldwork base. Our route from Longyearbyen to Ny-â„«lesund took us through the sound of Forlandsundet separating Prins Karls Forland and the west side of Spitsbergen. The boat slowly carved a path through the sea ice and allowed us to see some spectacular views of mountains and ice on our journey to Ny-â„«lesund.

view of Ny-â„«lesund, a small research town hosting research stations from many countries
Photo 4: Ny-â„«lesund is a small research town hosting research stations from many countries.

When we arrived in Ny-Ålesund our first task was to find the fieldwork gear, assemble the drill, and set up the lab where we would prepare permafrost samples for microbiological analyses. We divided into a “drilling team” and a “lab team” with the drilling team focused on finding suitable areas near Ny-Ålesund for drilling permafrost, and the lab team focused on sectioning permafrost cores and preparing them for future microbiological analyses in our home laboratories.

Karen Lloyd, Donato Giovannelli, and Andrey Abramov drilling permafrost
Photo 5: Karen Lloyd, Donato Giovannelli, and Andrey Abramov drilling permafrost.

Contamination is a central challenge for drilling any material for microbiology investigations, including permafrost. Often fluids are used to support the drilling process but using drilling fluids can contaminate permafrost with foreign microbes. Since our investigations focused on in situ microbes, avoiding contamination was essential. Avoiding contamination is particularly important when the abundance of microbes in the permafrost is low, which preliminary investigations of the microbiology of this area suggest. Contamination may obscure real microbial signals. Our drill did not use drilling fluids, and because of this, friction between the drill barrel (the rotating cylinder at the end of the drill that cut out permafrost core sections) and the surrounding permafrost created heat that could melt the permafrost. Preventing the core material from getting too warm during drilling was therefore also important.

Drilling permafrost in Svalbard
Photo 6: Drilling permafrost in Svalbard.

Permafrost core sections were removed from the earth in ~30 cm intervals in core liners that held together the structure of the permafrost. Varying with depth, the permafrost material was dry, loose, and sandy, and sometimes it was hard and consolidated like rock. Coloured layers could be seen at different depths of the core from the same borehole hinting that different layers have different geochemistry and different in situ microbial metabolisms. In the lab, we separated each core section into smaller sections so that specific permafrost layers could be analyzed for microbiology and biogeochemistry. The cores from each of these were stored frozen and transported to laboratories in London, Naples, New Jersey, and Knoxville, for experiments and analyses that will soon help us understand how microbes in Svalbard permafrost are affected by and participate in Arctic warming.

sampling core material into sterile tubes for analyses
Photo 7: Margaret Cramm and Matteo Selci sampling core material into sterile tubes for analyses that will be done at the researchers’ home laboratories.

AMP’D Field Team:

Karen Lloyd, University of Tennessee, Twitter: @archaearama

Tatiana Vishnivetskaya, University of Tennessee, Twitter: @tvishniv

Brianna Green, University of Tennessee, Twitter: @Geo_BRIology

Sayali Mulay, University of Tennessee, Twitter: @mulay_sayali

Katie Sipes, University of Tennessee, Twitter: @KatieSipes42

Donato Giovannelli, University of Naples, Twitter: @d_giovannelli

Matteo Selci, University of Naples, Twitter: @matteo_selci

James Bradley, Queen Mary University of London, Twitter: @drbradbrad

Margaret Cramm, Queen Mary University of London, Twitter: @microbeMAC

Andrey Abramov, Institute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Instagram: @forestpro

Julia Boike, Alfred Wegener Institute, Potsdam

The wider AMP’D project also involves Co-Investigators: Andrew Steen (University of Tennessee), Tullis C Onstott (Princeton University), Robert Hettich (Oak Ridge National Laboratory), and John Cliff (Pacific Northwest National Laboratory).